Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
BRCA rs117654382 chr7:112090448 G/T 2.19E-6 1072 27.97 27.63 26.4 KM Plot
BRCA rs12368460 chr12:26243296 G/A 2.64E-7 1068 29.32 26.6 22.6 KM Plot
BRCA rs12369397 chr12:26245674 C/T 3.02E-7 1064 29.08 26.4 22.6 KM Plot
BRCA rs12426668 chr12:26215958 A/T 7.01E-9 1060 28.9 24.97 21.03 KM Plot
BRCA rs12625069 chr20:25114608 G/A 5.82E-6 1083 28.18 29.43 17.77 KM Plot
BRCA rs138559466 chr7:112104417 GTAATTATTACTCCTTTATGAGAGT/G 1.36E-6 1073 28.23 28.67 27.5 KM Plot
BRCA rs156709 chr2:114759354 A/G 1.75E-8 1085 15.47 31.8 27.03 KM Plot
BRCA rs156710 chr2:114758886 A/C 1.75E-8 1085 15.47 31.8 27.03 KM Plot
BRCA rs156711 chr2:114757932 A/G 4.01E-8 1087 16.77 31.23 27.32 KM Plot
BRCA rs156712 chr2:114756395 G/A 1.28E-7 1086 16.07 31.43 27.03 KM Plot
BRCA rs156714 chr2:114756025 C/T 4.41E-9 1087 27.37 30.77 16.07 KM Plot
BRCA rs16884951 chr5:55460756 C/G 4.25E-6 1087 29.43 21.13 14.77 KM Plot
BRCA rs16929857 chr12:26151731 A/G 2.01E-7 1079 30.13 24.9 21.43 KM Plot
BRCA rs16929998 chr12:26215107 A/G 7.7E-9 1059 28.9 24.93 21.03 KM Plot
BRCA rs16930076 chr12:26233778 T/G 2.39E-7 1073 29.08 26.5 22.6 KM Plot